IEEE Projects :: Computational Biology and Bio Informatics – Titles & Abstracts
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IEEE Titles 2012 :: Computational Biology and Bio Informatics
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1 |
A Biologically Inspired Validity Measure for Comparison of Clustering Methods over Metabolic Data Sets |
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2 |
A Co-Clustering Approach for Mining Large Protein-Protein Interaction Networks |
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3 |
A Comparative Study on Filtering Protein Secondary Structure Prediction |
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4 |
A Computational Model for Predicting Protein Interactions Based on Multidomain Collaboration |
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5 |
A Framework for Incorporating Functional Interrelationships into Protein Function Prediction Algorithms |
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6 |
A Hybrid Approach to Survival Model Building Using Integration of Clinical and Molecular Information in Censored Data |
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7 |
A Hybrid EKF and Switching PSO Algorithm for Joint State and Parameter Estimation of Lateral Flow Immunoassay Models |
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8 |
A Memory Efficient Method for Structure-Based RNA Multiple Alignment |
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9 |
A Metric for Phylogenetic Trees Based on Matching |
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10 |
A Probabilistic Scheme for Keyword-Based Incremental Query Construction |
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11 |
A New Efficient Data Structure for Storage and Retrieval of Multiple Biosequences |
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12 |
A New Unsupervised Feature Ranking Method for Gene Expression Data Based on Consensus Affinity |
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13 |
A Sparse Regulatory Network of Copy-Number Driven Gene Expression Reveals Putative Breast Cancer Oncogenes |
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14 |
A Survey on Filter Techniques for Feature Selection in Gene Expression Microarray Analysis |
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15 |
A Swarm Intelligence Framework for Reconstructing Gene Networks: Searching for Biologically Plausible Architectures |
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16 |
A Top-r Feature Selection Algorithm for Microarray Gene Expression Data |
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17 |
Algorithms for Reticulate Networks of Multiple Phylogenetic Trees |
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18 |
Algorithms to Detect Multi-protein Modularity Conserved during Evolution |
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19 |
An Efficient Algorithm for Haplotype Inferenceon Pedigrees with Recombinations and Mutations |
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20 |
An Efficient Method for Exploring the Space of Gene Tree/Species Tree Reconciliations in a Probabilistic Framework |
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21 |
An Efficient Method for Modeling Kinetic Behavior of Channel Proteins in Cardiomyocytes |
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22 |
An Information Theoretic Approach to Constructing Robust Boolean Gene Regulatory Networks |
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23 |
Antilope—A Lagrangian Relaxation Approach to the de novo Peptide Sequencing Problem |
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24 |
Assortative Mixing in Directed Biological Networks |
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25 |
BpMatch: An Efficient Algorithm for a Segmental Analysis of Genomic Sequences |
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26 |
Clustering 100,000 Protein Structure Decoysin Minutes |
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27 |
Composition Vector Method Based on Maximum Entropy Principle for Sequence Comparison |
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28 |
Constructing and Drawing Regular Planar Split Networks |
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29 |
Constructing Complex 3D Biological Environments from Medical Imaging Using High Performance Computing |
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30 |
CSD Homomorphisms between Phylogenetic Networks |
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31 |
Designing Filters for Fast-Known NcRNA Identification |
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32 |
Detection of Outlier Residues for Improving Interface Prediction in Protein Heterocomplexes |
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33 |
DICLENS: Divisive Clustering Ensemble with Automatic Cluster Number |
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34 |
Disease Liability Prediction from Large Scale Genotyping Data Using Classifiers with a Reject Option |
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35 |
Drosophila Gene Expression Pattern Annotation through Multi-Instance Multi-Label Learning |
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36 |
Efficient Approaches for Retrieving Protein Tertiary Structures |
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37 |
Efficient Genotype Eliminationvia Adaptive Allele Consolidation |
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38 |
Efficient Maximal Repeat Finding Using the Burrows-Wheeler Transform and Wavelet Tree |
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39 |
Eigen-Genomic System Dynamic-Pattern Analysis (ESDA): Modeling mRNA Degradation and Self-Regulation |
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40 |
Empirical Evidence of the Applicability of Functional Clustering through Gene Expression Classification |
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41 |
Exploiting Intrastructure Information for Secondary Structure Prediction with Multifaceted Pipelines |
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42 |
Exploiting the Functional and Taxonomic Structure of Genomic Data by Probabilistic Topic Modeling |
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43 |
Fast Local Search for Unrooted Robinson-Foulds Supertrees |
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44 |
Extending Attribute Information for Small Data Set Classification |
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45 |
Fast Parallel Markov Clustering in Bioinformatics Using Massively Parallel Computing on GPU with CUDA and ELLPACK-R Sparse Format |
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46 |
Faster Mass Spectrometry-Based Protein Inference: Junction Trees Are More Efficient than Sampling and Marginalization by Enumeration |
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47 |
Gene Classification Using Parameter-Free Semi-Supervised Manifold Learning |
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48 |
GSGS: A Computational Approach to Reconstruct Signaling Pathway Structures from Gene Sets |
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49 |
Hash Subgraph Pairwise Kernel for Protein-Protein Interaction Extraction |
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50 |
Identification of Differentially Expressed Genes for Time-Course Microarray Data Based on Modified RM ANOVAOla ElBakry, |
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51 |
Identification of Essential Proteins Based on Edge Clustering Coefficient |
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52 |
Identifying Bacterial Virulent Proteins by Fusing a Set of Classifiers Based on Variants of Chou’s Pseudo Amino Acid Composition and on Evolutionary Information |
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53 |
Identifying Gene Pathways Associated with Cancer Characteristics via Sparse Statistical Methods |
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54 |
Inference of Biological S-System Using the Separable Estimation Method and the Genetic Algorithm |
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55 |
Inferring Gene Regulatory Networks via Nonlinear State-Space Models and Exploiting Sparsity |
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56 |
Inferring the Number of Contributors to Mixed DNA Profiles |
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57 |
Intervention in Gene Regulatory Networks viaPhenotypically Constrained Control PoliciesBased on Long-Run Behavior |
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58 |
Iterative Dictionary Construction for Compression of Large DNA Data Sets |
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59 |
k-Information Gain Scaled Nearest Neighbors:A Novel Approach to Classifying Protein-Protein Interaction-Related Documents |
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60 |
Markov Invariants for Phylogenetic Rate Matrices Derived from Embedded Submodels |
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61 |
Matching Split Distance for Unrooted Binary Phylogenetic Trees |
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62 |
Memory Efficient Algorithms for Structural Alignment of RNAs with Pseudoknots |
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63 |
MinePhos: A Literature Mining System for Protein Phoshphorylation Information Extraction |
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64 |
Molecular Dynamics Trajectory Compressionwith a Coarse-Grained Model |
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65 |
Multiobjective Optimization Based-Approach forDiscovering Novel Cancer Therapies |
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66 |
Multiscale Binarization of Gene Expression Data for Reconstructing Boolean Networks |
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67 |
Mutual Information Optimization for Mass Spectra Data Alignment |
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68 |
On the Deep Order-Preserving Submatrix Problem: A Best Effort Approach |
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69 |
On Complexity of Protein Structure Alignment Problem under Distance Constraint |
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70 |
On Parameter Synthesis by Parallel Model Checking |
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71 |
On the Application of Active Learning and Gaussian Processes in Postcryo preservation Cell Membrane Integrity Experiments |
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72 |
On the Elusiveness of Clusters |
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73 |
Optimizing Phylogenetic Networks for Circular Split Systems |
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74 |
Output-Sensitive Algorithms for Finding the Nested Common Intervals of Two General Sequences |
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75 |
Parallelized Evolutionary Learning for Detection of Biclusters in Gene Expression Data |
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76 |
Parameter Estimation Using Metaheuristics in Systems Biology: A Comprehensive Review |
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77 |
Peptide Reranking with Protein-Peptide Correspondence and Precursor Peak Intensity Information |
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78 |
Predicting Ligand Binding Residues and Functional Sites Using Multipositional Correlations with Graph Theoretic Clustering and Kernel CCA |
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79 |
Predicting Metal-Binding Sites from Protein Sequence |
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80 |
Predicting Protein Function by Multi-Label Correlated Semi-Supervised Learning |
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81 |
Protein Complexes Discovery Based on Protein-Protein Interaction Data via a Regularized Sparse Generative Network Model |
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82 |
Quantifying Dynamic Stability of Genetic Memory Circuits |
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83 |
Quantitative Analysis of the Self-Assembly Strategies of Intermediate Filaments from Tetrameric Vimentin |
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84 |
Quantum Gate Circuit Model of Signal Integration in Bacterial Quorum Sensing |
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85 |
Refining Regulatory Networks through Phylogenetic Transfer of Information |
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86 |
RENNSH: A Novel α-Helix Identification Approach for Intermediate Resolution Electron Density Maps |
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87 |
Residues with Similar Hexagon Neighborhoods Share Similar Side-Chain Conformations |
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88 |
Reverse Engineering and Analysis of Genome-Wide Gene Regulatory Networks from Gene Expression Profiles Using High-Performance Computing |
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89 |
Robust Classification Method of Tumor Subtype by Using Correlation Filters |
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90 |
Scaffold Filling under the Break point and Related Distances |
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91 |
SimBioNeT: A Simulator of Biological Network Topology |
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92 |
Smoldyn on Graphics Processing Units: Massively Parallel Brownian Dynamics Simulations |
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93 |
Smolign: A Spatial Motifs-Based Protein Multiple Structural Alignment Method |
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94 |
Stable Gene Selection from Microarray Data via Sample Weighting |
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95 |
Stochastic Gene Expression Modeling with Hill Function for Switch-Like Gene Responses |
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97 |
Structural SCOP Super family Level Classification Using Unsupervised Machine Learning |
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98 |
Subcellular Localization Prediction through Boosting Association Rules |
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99 |
The Complexity of Finding Multiple Solutions to Betweenness and Quartet Compatibility |
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100 |
The GA and the GWAS: Using Genetic Algorithms to Search for Multilocus Associations |
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101 |
The Impact of Normalization and Phylogenetic Information on Estimating the Distancefor Metagenomes |
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102 |
The Kernel of Maximum Agreement Subtrees |
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103 |
The LASSO and Sparse Least Squares Regression Methods for SNP Selection in Predicting Quantitative Traits |
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104 |
The Relevance of Topology in Parallel Simulation of Biological Networks |
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105 |
Touring Protein Space with Matt |
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106 |
Transactional Database Transformation and Its Application in Prioritizing Human Disease Genes |
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107 |
Transient Dynamics of Reduced-Order Models of Genetic Regulatory Networks |
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108 |
TUsing GPUs for the Exact Alignment of Short-Read Genetic Sequences by Means of the Burrows-Wheeler Transform |
